/*
 * Copyright 2010-2012 Susanta Tewari. <freecode4susant@users.sourceforge.net>
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

package coalescent.phylogeny;

import commons.util.graph.Node;

/**
 * @author Susanta Tewari
 */
public interface BuildPPhylogenyAlgo {

    /** Field description */
    public static final BuildPPhylogenyAlgo ALGO_GUSFIELD = new BuildPPhylogenyAlgo() {

        @Override
        public Node<String, String> buildTree(Iterable<byte[]> data,
                final String NO_MUTATION_SYMBOL, final String MUTATION_DELIM) {

            GusfieldAlgorithm algo = new GusfieldAlgorithm(data, NO_MUTATION_SYMBOL,
                                         MUTATION_DELIM);

            return algo.buildTree();
        }
    };

    /**
     * Method description
     *
     *
     * @param data
     * @param NO_MUTATION_SYMBOL
     * @param MUTATION_DELIM
     *
     * @return
     */
    public abstract Node<String, String> buildTree(Iterable<byte[]> data,
            final String NO_MUTATION_SYMBOL, final String MUTATION_DELIM);
}
